PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0102s0147.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 399aa    MW: 44541.6 Da    PI: 4.4914
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0102s0147.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.6e-36561472102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye++ed+e++e++sws   nsf+v+d+++f++++LpkyFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k
  Kaladp0102s0147.5.p  56 FLTKTYEMVEDPETDEVVSWSGARNSFIVWDSNRFSTTLLPKYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQK 136
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+++
  Kaladp0102s0147.5.p 137 HLLKTIKRRRH 147
                          ********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.1E-3952145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6152145IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-3552145IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-205679IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3156145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-20107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDRAKTTVKE EEVVITSNGM TSGGGIPSSA ASSTTTTTSS APRPMEGLHD TGPPPFLTKT  60
YEMVEDPETD EVVSWSGARN SFIVWDSNRF STTLLPKYFK HNNFSSFIRQ LNTYGFRKVD  120
PDRWEFANEG FLGGQKHLLK TIKRRRHVAQ NVQQHGGSSV CVEVGQYGLE GQLERLRRDR  180
SVLMTEILRL KQEQQESREY IVAMQNRLQA TERKQQQMMN FLARALNNPS FIQQFMLESA  240
ERRALDGANM KRKRRLTAST SAENLKEQID ILAVQDDSLG LGQGLQAQDD LTNMESEIEN  300
LFAAGLESES SNDVRLPPRA ESMAKAGGSN LGSVNETLWD ELLSDDLVAD NEDDEQLFLG  360
DIPDIDVPVE DLGGADPSDW GEDLQDLVDQ MNFLKSKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-265414518120Heat shock factor protein 1
5d5u_B1e-265414527129Heat shock factor protein 1
5d5v_B1e-265414527129Heat shock factor protein 1
5d5v_D1e-265414527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144LKTIKRR
2174179RLRRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077263.11e-166PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotP411521e-131HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A067KQI11e-168A0A067KQI1_JATCU; Uncharacterized protein
STRINGVIT_04s0008g01110.t011e-157(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-127heat shock transcription factor A2